Use snpStats with R version 3.0.1 -
i trying use package snpstats
r version 3.0.1. when use command, error
warning message: package ‘snpstats’ not available (for r version 3.0.1)
however, when on snpstats documentation, under details, see information:
details package: snpstats version: 1.5.6 date: 2012-03-27 depends: r(>= 2.10.0), survival, methods, matrix imports: graphics, grdevices, methods, stats, survival, utils, matrix suggests: hexbin license: gpl-3 url: http://www-gene.cimr.cam.ac.uk/clayton collate: ss.r contingency.table.r convert.r compare.r glm-test.r imputation.r indata.r long.r misc.r ld.r mvtests.r pedfile.r outdata.r plink.r qc.r qq-chisq.r single.r tdt-single.r structure.r xstuff.r zzz.r lazyload: yes biocviews: microarray, snp, geneticvariability packaged: 2012-03-27 built: r 2.14.1; i686-pc-linux-gnu; 2012-03-27 13:27:08 utc; unix
doesn't depends: r(>= 2.10.0), survival, methods, matrix
mean should run on r x64 on windows 7
looks may using install.packages()
? or trying install older version?
try following instructions on bioconductor site: http://bioconductor.org/packages/2.12/bioc/html/snpstats.html
source("http://bioconductor.org/bioclite.r") bioclite("snpstats")
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